Thanks in advance for any suggestions as to what may be going wrong and/or how I can fix this. When I try to deactivate the environment I get the following errors: $ source deactivate PackageNotInstalledError: Package is not installed in prefix. Now when I list the environments I expect to see an asterisk next to the test environment's name, indicating that it's now the active environment, but that's missing: $ source activate test_envĪt this point I can try using conda commands and they'll all fail since the environment's not being found and/or the environment itself is incomplete/malformed/corrupted: $ conda listĮnvironmentLocationNotFound: Not a conda environment: C:\home\miniconda3\envs\test_env If a packages fails to install because of a missing library, run the Cygwin setup utility and check if a precompiled package already exists under 'Python' (e.g., python27-numpy) or if a library with the same name is listed under 'Libs' and then install the 'devel' version of it (e.g., libpng-devel). Test_env C:\home\miniconda3\envs\test_envĪctivate the new environment, using source (since Cygwin is running bash). # * for power-users using bash, you must sourceĭisplay the environments again, showing that the environment was created: $ conda env list ![]() # To deactivate an active environment, use: Start with a fresh Miniconda installation (downloaded and installed today), and list the environments: $ conda env listĬreate an environment: $ conda create -n test_envĮnvironment location: C:\home\miniconda3\envs\test_env After removing pygraphviz from the setup.py, it appears I have to manually install pybedtools or I get the error at the bottom. I am creating an environment using conda and it appears to be created OK, however when I activate and then try to use the environment I get an error that appears to show that there's something amiss with the environment that's been created. I'm using Cygwin (bash shell emulator) and within the Cygwin shell (at the command line) I'm trying to create a virtual environment using conda. ![]() On Windows 10 I have Miniconda3 installed under C:/home/miniconda3
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